cortex.mni.compute_mni_transform

cortex.mni.compute_mni_transform(subject, xfm, template='/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz')

Compute transform from the space specified by xfm to MNI standard space.

Parameters

subjectstr

Subject identifier

xfmstr

Name of functional space transform. Can be ‘identity’ for anat space.

templatestr, optional

Path to MNI template volume. Defaults to FSL’s MNI152_T1_1mm_brain.

Returns

numpy.ndarray

Transformation matrix from the space specified by xfm to MNI space.