cortex.database.Database

class cortex.database.Database

Surface database

Attributes

This database object dynamically generates handles to all subjects within the filestore.

Methods

__init__([filestore])
clear_cache(subject[, clear_all_caches])	Clears config-specified and default file caches for a subject.
get_anat(subject[, type, xfmname, recache, ...])	Return anatomical information from the filestore.
get_cache(subject)
get_coords(subject, xfmname[, hemisphere, ...])	Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space
get_mask(subject, xfmname[, type])
get_mnixfm(subject, xfm[, template])	Get transform from the space specified by xfm to MNI space.
get_mri_surf2surf_matrix(subject, surface_type)	Get matrix generated by surf2surf to map one subject's surface to another's
get_overlay(subject[, overlay_file])
get_paths(subject)	Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches.
get_shared_voxels(subject, xfmname[, hemi, ...])	Get an array indicating which vertices are inappropriately mapped to the same voxel.
get_surf(subject, type[, hemisphere, merge, ...])	Return the surface pair for the given subject, surface type, and hemisphere.
get_surfinfo(subject[, type, recache])	Return auxillary surface information from the filestore.
get_view(vw, subject, name)	Set the view for an open webshow instance from a saved view
get_xfm(subject, name[, xfmtype])	Retrieves a transform from the filestore
make_subj(subject)
reload_subjects()	Force the reload of the subject dictionary.
save_mask(subject, xfmname, type, mask)
save_view(vw, subject, name[, is_overwrite])	Set the view for an open webshow instance from a saved view
save_xfm(subject, name, xfm[, xfmtype, ...])	Load a transform into the surface database.

Attributes

subjects